Information for 20-GCAGRYGCCKTGK (Motif 34)

A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
Reverse Opposite:
G T A C A G T C C G T A G T A C A C T G A C T G A G T C C T G A A G C T A T G C A C G T A T C G A G T C
p-value:1e-6
log p-value:-1.504e+01
Information Content per bp:1.873
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 28.9bp
Average Position of motif in Background78.5 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GCAGRYGCCKTGK
SDGCAGGTGCNS---
 A C G T A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCAGRYGCCKTGK
NNVVCAGCTGBN----
 A C G T A C G T A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRYGCCKTGK
NNCAGGTGCG----
 A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G A C G T A C G T A C G T A C G T

HES7/MA0822.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCAGRYGCCKTGK
TGGCACGTGCCA---
 A C G T A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRYGCCKTGK
GACAGGTGTN----
 A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCAGRYGCCKTGK
CGCAGCTGCG----
 A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GCAGRYGCCKTGK
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRYGCCKTGK
NNCAGGTGNN----
 A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T

TCF3/MA0522.2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAGRYGCCKTGK
NNCAGGTGTN----
 A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T A C G T A C G T A C G T A C G T

HES5/MA0821.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCAGRYGCCKTGK
TGGCACGTGCCG---
 A C G T A C G T A C T G A T G C C G T A A T C G C T G A A G C T A C T G A G T C A G T C A C T G A C G T A C T G A C T G
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G A C G T A C G T A C G T