Information for 10-TCACCCATTA (Motif 39)

A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G A C T G A C T G A C G T A C T G C G T A
p-value:1e-3
log p-value:-7.658e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets93.0 +/- 0.0bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VENTX/MA0724.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TCACCCATTA-
--ACCGATTAG
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

BSX/MA0876.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TCACCCATTA-
---CCAATTAA
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCACCCATTA--
--GGCCATTAAC
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TCACCCATTA-
---GCAATTAG
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:TCACCCATTA--
----YCATTAMC
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TCACCCATTA-
-AAACMATTAN
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TCACCCATTA-
---BCMATTAG
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

GSX2/MA0893.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TCACCCATTA--
--ACTAATTAAA
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCACCCATTA
--ACCAATTA
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A
A C G T A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A

Barhl1/MA0877.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCACCCATTA--
--NNCAATTANN
 A C G T A G T C C G T A A G T C A G T C A G T C C G T A A C G T A C G T C G T A A C G T A C G T
A C G T A C G T T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C