Information for 17-CAGCCCTCAGRKV (Motif 33)

T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
Reverse Opposite:
A G T C G T C A A G C T A G T C G A C T A C T G C G T A C A T G C A T G A T C G T G A C A C G T A C T G
p-value:1e-3
log p-value:-8.946e+00
Information Content per bp:1.568
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif22.73%
Number of Background Sequences with motif1086.2
Percentage of Background Sequences with motif2.33%
Average Position of motif in Targets56.8 +/- 25.3bp
Average Position of motif in Background51.0 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCCCTCAGRKV
CTGCCCGCA----
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGCCCTCAGRKV
CAGCC--------
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTCAGRKV
GYCATCMATCAT---
 A C G T A C G T T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGCCCTCAGRKV-
NTGCCCANNGGTNA
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G A C G T
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAGCCCTCAGRKV-
-TGCCCTNAGGGCA
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCCCTCAGRKV
CCATCAATCAAA--
 A C G T T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCCCTCAGRKV-
-TGCCCTNAGGGCA
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCCCTCAGRKV-
-TGCCCNNAGGGCA
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCCCTCAGRKV
AGCCACTCAAG--
 T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CAGCCCTCAGRKV
ATAATCCC-------
 A C G T A C G T T A G C T C G A A C T G A T G C G A T C G A T C G C A T G T A C C G T A C T A G C T G A C A G T T A C G
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T