Information for 3-WCTTAAAACAWTGAAA (Motif 3)

C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
Reverse Opposite:
A C G T A C G T G A C T A G T C G C T A G C A T A C G T T A C G A G C T G C A T C A G T G C A T C G T A C T G A T C A G G C T A
p-value:1e-10
log p-value:-2.466e+01
Information Content per bp:1.705
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif22.73%
Number of Background Sequences with motif44.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets22.8 +/- 9.1bp
Average Position of motif in Background46.0 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0067.1_Sox18_1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:WCTTAAAACAWTGAAA
NNTNANAACAATTNNA
 C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:WCTTAAAACAWTGAAA----
----AGAGCCATAAAATTCG
 C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.53
Offset:5
Orientation:forward strand
Alignment:WCTTAAAACAWTGAAA
-----AAGCCATAAAA
 C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
A C G T A C G T A C G T A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

Nkx2-5/MA0063.1/Jaspar

Match Rank:4
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-WCTTAAAACAWTGAAA
CAATTAA----------
 A C G T C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---WCTTAAAACAWTGAAA
ACCACTTAA----------
 A C G T A C G T A C G T C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-WCTTAAAACAWTGAAA
ATATCAAAACAAAACA-
 A C G T C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:WCTTAAAACAWTGAAA--
-ATAAGAACAAAGGACTA
 C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:WCTTAAAACAWTGAAA
NTTNAGAACAATTA--
 C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---WCTTAAAACAWTGAAA
ACCACTTAA----------
 A C G T A C G T A C G T C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--WCTTAAAACAWTGAAA--
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T C G A T A G T C A G C T A C G T C G T A G T C A C G T A C T G A A T G C G T C A C G A T C G A T C T A G C T G A C G T A G T C A A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A