Information for 13-CGCTCCTGCTCVT (Motif 29)

A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
Reverse Opposite:
G T C A A C T G A T C G C G T A C T A G G T A C C G T A A C T G A T C G C T G A A C T G A G T C C T A G
p-value:1e-4
log p-value:-1.150e+01
Information Content per bp:1.725
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif88.0
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets21.7 +/- 1.2bp
Average Position of motif in Background42.6 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCTCCTGCTCVT
-CCCCCTGCTGTG
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGCTCCTGCTCVT
SNGCACCTGCHS--
 A C G T A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGCTCCTGCTCVT---
-TCNCCTGCTGNGNNN
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCTCCTGCTCVT
CGCAGCTGCG---
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGCTCCTGCTCVT
NNTNCGCACCTGTNGAN
 A C G T A C G T A C G T A C G T A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

TCF4/MA0830.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCTCCTGCTCVT
CGCACCTGCT---
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGCTCCTGCTCVT---
-TNTCCTGCTGTGNNG
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGCTCCTGCTCVT-
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGCTCCTGCTCVT
TGCAGCTGTCCCT
 A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCTCCTGCTCVT-
GGCCYCCTGCTGDGH
 A C G T A G T C T C A G A G T C A G C T A T G C G T A C A C G T A C T G A G T C A C G T A T G C T A G C A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C