Information for 12-GNCCCATCMAGRG (Motif 27)

C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
Reverse Opposite:
A G T C A G T C A G T C G A C T A C G T A C T G C T G A G C A T T A C G C T A G A C T G C A T G G T A C
p-value:1e-5
log p-value:-1.233e+01
Information Content per bp:1.649
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif31.82%
Number of Background Sequences with motif1523.2
Percentage of Background Sequences with motif3.27%
Average Position of motif in Targets51.7 +/- 17.0bp
Average Position of motif in Background50.5 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GNCCCATCMAGRG
-CCYMATAAAA--
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GNCCCATCMAGRG-
--CACAGCAGGGGG
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GNCCCATCMAGRG---
TGGACCAATCAGCACTCT
 A C G T A C G T C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:4
Score:0.50
Offset:1
Orientation:forward strand
Alignment:GNCCCATCMAGRG-----
-AAACATAATGAGGTTGC
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

MF0008.1_MADS_class/Jaspar

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GNCCCATCMAGRG
---CCATATATGG
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GNCCCATCMAGRG-
GGCCYCCTGCTGDGH
 A C G T C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----GNCCCATCMAGRG
AAATGGACCAATCAG---
 A C G T A C G T A C G T A C G T A C G T C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GNCCCATCMAGRG
-GNCTATAAAAGG
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GNCCCATCMAGRG---
-TCNCCTGCTGNGNNN
 C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:10
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GNCCCATCMAGRG
AAGACCCYYN-----
 A C G T A C G T C A T G G A T C G T A C A G T C A T G C C G T A A G C T T G A C G T C A C T G A C T A G C T A G C T A G
T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C A C G T A C G T A C G T A C G T A C G T