Information for 9-ATGCAVAGAATVT (Motif 24)

C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
Reverse Opposite:
C G T A A G T C G T C A C G A T C G A T A T G C A C G T A C T G A C G T A T C G A T G C G C T A A G C T
p-value:1e-5
log p-value:-1.368e+01
Information Content per bp:1.721
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif167.7
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets48.2 +/- 26.1bp
Average Position of motif in Background50.4 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATGCAVAGAATVT-
CGAAGCACACAAAATA
 A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAVAGAATVT
ATTTGCATACAATGG
 A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ATGCAVAGAATVT
NNNVCTGWGYAAACASN--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATGCAVAGAATVT
TACATGTGCACATAAAA-
 A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAVAGAATVT
CAAAGTAAACANNNN
 A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATGCAVAGAATVT-
AAAAAGTAAACAAAGAC
 A C G T A C G T A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATGCAVAGAATVT
--GCAGTGATTT-
 C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGCAVAGAATVT
AAAGTAAACA----
 A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGCAVAGAATVT
AAAGTAAACA----
 A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGCAVAGAATVT
TAAGTAAACAAA--
 A C G T C T G A C G A T A T C G A T G C C G T A T A G C C G T A A T C G C G T A C G T A A C G T T A C G C G A T
G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A A C G T A C G T