Information for 1-GGCABTCGAT (Motif 18)

A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T
Reverse Opposite:
C G T A G A C T A G T C A C T G C T G A T A C G A C G T A C T G A G T C A G T C
p-value:1e-6
log p-value:-1.551e+01
Information Content per bp:1.769
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif18.18%
Number of Background Sequences with motif105.5
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets46.5 +/- 24.9bp
Average Position of motif in Background43.5 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCABTCGAT--
GWAAYHTGAKMC
 A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T
C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

ONECUT1/MA0679.1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGCABTCGAT---
AAAAAATCGATAAT
 A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T A C G T
T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

ONECUT2/MA0756.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGCABTCGAT---
AAAAAATCGATAAT
 A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCABTCGAT--
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGCABTCGAT
HNRAATCAAT
 A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCABTCGAT
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGCABTCGAT
SCTGTCAVTCAV-
 A C G T A C G T A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGCABTCGAT---
AAAAAATCAATAAT
 A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A G A C T G T A C T C G A C G T A C G A T C G T A G C T A G C A T

PB0169.1_Sox15_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------GGCABTCGAT
TTGAATGAAATTCGA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GGCABTCGAT---
AGGGAAGTCATTTCT
 A C G T A C G T A C T G C T A G G T A C C G T A A G T C A G C T A G T C C T A G C T G A A C G T A C G T A C G T A C G T
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T