Information for 14-YMTRAWMCCMAYMKGC (Motif 17)

A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C G T C A A C T G T C A G A C G T A C G T A C T G A C T G A C T G G C A T A G C T A G C T C G T A A C G T C T A G
p-value:1e-6
log p-value:-1.606e+01
Information Content per bp:1.772
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.0 +/- 8.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.55
Offset:2
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
--TAATCCCN------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--YMTRAWMCCMAYMKGC
AGGCTAATCCCCAANG--
 A C G T A C G T A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
CTTAATCCC-------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---YMTRAWMCCMAYMKGC
ATAAATGACACCTATCA--
 A C G T A C G T A C G T A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
-TTAATCCC-------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
-ATAATCCC-------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
CCTAATCCGC------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
-----AGCCAATCGG-
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---YMTRAWMCCMAYMKGC
ANANNTGATACCCNATN--
 A C G T A C G T A C G T A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:YMTRAWMCCMAYMKGC
GCTAATCCCC------
 A G T C G T C A A C G T T C A G C T G A C G A T G T A C A G T C A G T C G T C A C G T A A G C T G T A C A C G T A C T G A G T C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T A C G T A C G T A C G T