Information for 18-ACTAGCCAGA (Motif 36)

C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
Reverse Opposite:
A C G T A G T C A C G T A C T G A C T G A G T C A C G T C G T A A C T G A C G T
p-value:1e-4
log p-value:-1.080e+01
Information Content per bp:1.962
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.0 +/- 28.2bp
Average Position of motif in Background61.5 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:ACTAGCCAGA--
--ATGCCAGACN
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACTAGCCAGA
NNACTTGCCTT-
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ACTAGCCAGA
---TGCCAA-
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ACTAGCCAGA
-CGTGCCAAG
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ACTAGCCAGA
-BCAGACWA-
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----ACTAGCCAGA-
TGACANARRCCAGRC
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ACTAGCCAGA
CGTCTAGACA--
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACTAGCCAGA-------
CAAATCCAGACATCACA
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

GFX(?)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--ACTAGCCAGA
ATTCTCGCGAGA
 A C G T A C G T C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A
T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ACTAGCCAGA--
ACTAGCCAATCA
 C G T A A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C T G G T C A A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A