Information for 5-TGGCAGCCGTCAG (Motif 11)

A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
Reverse Opposite:
G T A C A C G T A C T G C T G A A G T C C T A G A T C G A G T C A C G T A C T G A G T C A G T C C G T A
p-value:1e-9
log p-value:-2.184e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.4 +/- 15.0bp
Average Position of motif in Background37.4 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF1/MA0796.1/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGGCAGCCGTCAG
TGACAGCTGTCA-
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCCGTCAG
TGACAGCTGTCA-
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGGCAGCCGTCAG
TGACAGGTGTCA-
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TGGCAGCCGTCAG
TGACAGGTGTCA-
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCCGTCAG----
NNNCAGCTGTCAATATN
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCCGTCAG
NNGCAGCTGTC--
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCCGTCAG
NNGCAGCTGTT--
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCGTCAG
CTTGGCAA-------
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCAGCCGTCAG-
-TGCAGCTGTCCCT
 A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G A C G T
A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCCGTCAG
VBTGWCAGCB-----
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A T G C A G T C A C T G A G C T A G T C G T C A A C T G
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T