Information for 3-CCCAGDCACAACACAB (Motif 6)

A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
Reverse Opposite:
T C A G G C A T A C T G A G C T A T C G A C G T A G C T T A C G A C G T A T C G G T A C A T G C C G A T A C T G A C T G A T C G
p-value:1e-12
log p-value:-2.993e+01
Information Content per bp:1.723
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.5 +/- 19.8bp
Average Position of motif in Background52.9 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCCAGDCACAACACAB
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCCAGDCACAACACAB
-CCAGACAG-------
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGDCACAACACAB
TGCCCAGNHW--------
 A C G T A C G T A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCCAGDCACAACACAB
-CCAGACRSVB-----
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCCAGDCACAACACAB
CGCCCCCTGACA--------
 A C G T A C G T A C G T A C G T A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCCAGDCACAACACAB
----GTCACATGAY--
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
A C G T A C G T A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCCAGDCACAACACAB
VGCTGWCAVB------
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCCAGDCACAACACAB
-BCAGACWA-------
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCCAGDCACAACACAB
-GCTGTCAA-------
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCCAGDCACAACACAB-
--ATGTCACAACAACAC
 A T G C G T A C A G T C C G T A A T C G C A T G A T G C C G T A A T G C T C G A C G T A T A G C C T G A T G A C C G T A A G T C A C G T
A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C