Information for 3-CCTTCAGAGCTCG (Motif 6)

A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
Reverse Opposite:
T G A C T C A G C T G A A C T G A T G C A C G T A G T C C A G T A C T G C G T A C G T A C T A G T A C G
p-value:1e-10
log p-value:-2.487e+01
Information Content per bp:1.636
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets73.6 +/- 16.4bp
Average Position of motif in Background28.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTTCAGAGCTCG----
CGAACAGTGCTCACTAT
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTTCAGAGCTCG
-CTYRAGTGSY--
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCTTCAGAGCTCG
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CCTTCAGAGCTCG
--TTGAGTGSTT-
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTTCAGAGCTCG
CCCCCTGCTGTG----
 A C G T A C G T A C G T A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTTCAGAGCTCG
-CTTGAGTGGCT-
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTTCAGAGCTCG
CCTGCTGAGH---
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTTCAGAGCTCG
-BTBRAGTGSN--
 A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTTCAGAGCTCG
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

RARA/MA0729.1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------CCTTCAGAGCTCG
CATTGACCTTTTGACCTC-
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T G A C T T A G C G C T A A C T G G T C A T A C G T A G C G A C T A G T C A C T G
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C A C G T