Information for 4-CGGCAGCTCC (Motif 11)

G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C
Reverse Opposite:
A C T G T A C G C G T A C T A G A G T C C A G T A C T G A T G C G A T C A C T G
p-value:1e-9
log p-value:-2.132e+01
Information Content per bp:1.835
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif502.3
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets51.4 +/- 29.6bp
Average Position of motif in Background50.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CGGCAGCTCC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CGGCAGCTCC-
-CGCAGCTGCG
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CGGCAGCTCC-
-----GCTCCG
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CGGCAGCTCC-
NNAGCAGCTGCT
 A C G T G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CGGCAGCTCC-
-AGCAGCTGCT
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T
A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGGCAGCTCC
CAGCAGCTGN
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Myog/MA0500.1/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGGCAGCTCC--
-GACAGCTGCAG
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T A C G T
A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

Myod1/MA0499.1/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGGCAGCTCC-
NGNGACAGCTGCN
 A C G T A C G T G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CGGCAGCTCC--
-AACAGCTGCAG
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T A C G T
A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CGGCAGCTCC--
--GCAGCTGTNN
 G T A C C T A G A T C G G T A C G T C A A C T G A G T C A C G T A T G C G T A C A C G T A C G T
A C G T A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T