Information for 12-TTCTTAAGCC (Motif 21)

A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C
Reverse Opposite:
A T C G A T C G A G T C C G A T A C G T G C T A G T C A A C T G C T G A C G T A
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.842
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.98%
Number of Background Sequences with motif129.3
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets52.8 +/- 24.5bp
Average Position of motif in Background53.9 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTCTTAAGCC-
--CTTAATCCC
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTCTTAAGCC--
----TAATCCCN
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TTCTTAAGCC-
---TTAATCCC
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTCTTAAGCC------
NTTGTTAATCCCTCTNN
 A C G T A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTCTTAAGCC--
--NYTAATCCYB
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTCTTAAGCC-
---TTAATCCT
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTCTTAAGCC-
---TTAATCCG
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T
A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TTCTTAAGCC
--GCTAATCC
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TTCTTAAGCC-
---ATAATCCC
 A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T
A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TTCTTAAGCC------
NNNATTAATCCGNTTNA
 A C G T A C G T A G C T A G T C A C G T C G A T G T C A C G T A A C T G T A G C T A G C A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A