Information for 1-CTCCAVAGTTVAC (Motif 4)

A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
Reverse Opposite:
A C T G C G A T A C T G C G T A C G T A G T A C A G C T A G T C A G C T A C T G A C T G C G T A A C T G
p-value:1e-11
log p-value:-2.682e+01
Information Content per bp:1.850
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.1 +/- 23.8bp
Average Position of motif in Background31.1 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTCCAVAGTTVAC
ATCCAC-------
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0109.1_Bbx_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTCCAVAGTTVAC-----
-NNNNCTGTTAACNNTNN
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A G T C G A T C T G C A C G T A T A G C A G C T C A T G C A G T A G C T C T G A G T C A G A T C T C G A C T G A C G A T A G T C C T G A

MYBL1/MA0776.1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTCCAVAGTTVAC---
----ACCGTTAACGGT
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T G A C T A G C T C A G G A C T G C A T C G T A T C G A G T A C A T C G C A T G G A C T

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCCAVAGTTVAC------
--ACTTAGTTAACTAAAAA
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCCAVAGTTVAC------
--CCTTAGTTAACTAAAAT
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTCCAVAGTTVAC
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTCCAVAGTTVAC
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTCCAVAGTTVAC---
TCTCAAAGGTCACCTG
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CTCCAVAGTTVAC
---CAAAGGTCAG
 A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTCCAVAGTTVAC
GCTCCG--------
 A C G T A G T C A C G T A G T C A G T C C T G A T A C G C T G A A C T G A C G T A C G T T A G C C G T A A G T C
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T