Information for 6-GGAGACAATA (Motif 20)

A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A
Reverse Opposite:
C A G T C T G A C A G T A C G T C A T G A C G T A G T C A C G T G T A C T G A C
p-value:1e-6
log p-value:-1.398e+01
Information Content per bp:1.775
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif203.7
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets50.2 +/- 25.8bp
Average Position of motif in Background53.3 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GGAGACAATA--
---GACAATGNN
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

PB0168.1_Sox14_2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGAGACAATA----
CTCACACAATGGCGC
 A C G T A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGAGACAATA----
TCACGGAACAATAGGTG
 A C G T A C G T A C G T A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T A C G T A C G T A C G T
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

SRY/MA0084.1/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGAGACAATA
GTAAACAAT-
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:forward strand
Alignment:GGAGACAATA--
--RAACAATGGN
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T A C G T
A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGAGACAATA-
-AAAACAATGG
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGAGACAATA
--NAACAAT-
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GGAGACAATA
---AACAAT-
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGAGACAATA-
-RNAACAATGG
 A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GGAGACAATA----
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C T G C A T G C G T A C T A G C G T A G T A C G T C A G T C A A G C T G T C A A C G T A C G T A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T