Information for 3-GCCTGTCAGTCCA (Motif 6)

A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
Reverse Opposite:
A C G T C A T G A C T G C G T A A T G C A C G T A C T G C G T A A G T C C G T A A C T G A C T G G T A C
p-value:1e-11
log p-value:-2.686e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 12.6bp
Average Position of motif in Background36.9 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GCCTGTCAGTCCA
GSCTGTCACTCA-
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GCCTGTCAGTCCA
-NCTGTCAATCAN
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCCTGTCAGTCCA
-SCTGTCAVTCAV
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCTGTCAGTCCA
AAGCACCTGTCAATAT-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GCCTGTCAGTCCA
-GCTGTCAA----
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCCTGTCAGTCCA
VGCTGWCAVB---
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCTGTCAGTCCA
AAAGACCTGTCAATCC-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCCTGTCAGTCCA-
--CNGTCACGCCAC
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A A C G T
A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GCCTGTCAGTCCA
-CCTGTCAA----
 A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCTGTCAGTCCA
AATTACCTGTCAATAC-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C G T G T A C C G T A A T C G A C G T A G T C G A T C C G T A
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C A C G T