Information for 4-GTGCACAATGCCATGG (Motif 11)

C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
Reverse Opposite:
A G T C G T A C G C T A A C G T A C T G A T C G A T G C G T C A A C G T A C G T A T C G A C G T A C T G A G T C C G T A A G T C
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.771
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.2 +/- 9.0bp
Average Position of motif in Background81.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GTGCACAATGCCATGG--
---AACAATAACATTGTT
 C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G A C G T A C G T
A C G T A C G T A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GTGCACAATGCCATGG
NTNTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGCACAATGCCATGG
TGGCACCATGCCAA--
 C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:4
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GTGCACAATGCCATGG--
---AACACTACCATTGTT
 C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G A C G T A C G T
A C G T A C G T A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GTGCACAATGCCATGG
NNGTATGTGCACATNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTGCACAATGCCATGG
TTGGCANNNTGCCAAG-
 A C G T C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GTGCACAATGCCATGG
NNTTTGCACACGGCCC---
 A C G T A C G T A C G T C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTGCACAATGCCATGG
CTCACACAATGGCGC--
 A C G T C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GTGCACAATGCCATGG
-----CAAGGHCANV-
 C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTGCACAATGCCATGG
----ACAAAG------
 C T A G C G A T C T A G A G T C C G T A A T G C G T C A G T C A A C G T A T C G A T G C A G T C C G T A C A G T C A T G A C T G
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T