Information for 3-TGAACTAAAG (Motif 8)

A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
Reverse Opposite:
A G T C A C G T A G C T A C G T C G T A A C T G A C G T A C G T A G T C C G T A
p-value:1e-10
log p-value:-2.421e+01
Information Content per bp:1.907
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets53.7 +/- 23.9bp
Average Position of motif in Background34.0 +/- 19.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGAACTAAAG
TGACCTYA--
 A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

PH0167.1_Tcf1/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------TGAACTAAAG-
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGAACTAAAG
TGACCT----
 A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:4
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------TGAACTAAAG-
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGAACTAAAG---
TTGACCTANTTATN
 A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

HMBOX1/MA0895.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGAACTAAAG
GTTAACTAGN-
 A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAACTAAAG
TGACCTTGAT
 A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGAACTAAAG
TGACCTARTT
 A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TGAACTAAAG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TGAACTAAAG--
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A G T C A A G T C A C G T C G T A C T G A T G C A A C T G A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T