Information for 1-GGGAGGCCCC (Motif 3)

A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C
Reverse Opposite:
A C T G C T A G A T C G A C T G G T A C A G T C G A C T G A T C G A T C G T A C
p-value:1e-11
log p-value:-2.643e+01
Information Content per bp:1.830
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.48%
Number of Background Sequences with motif346.7
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets51.0 +/- 27.9bp
Average Position of motif in Background47.0 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGGAGGCCCC
GGGGGAATCCCC
 A C G T A C G T A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGGAGGCCCC
GGAAATCCCC
 A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GGGAGGCCCC-
AGGGGATTCCCCT
 A C G T A C G T A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGAGGCCCC-
AGGGGAATCCCCT
 A C G T A C G T A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGGAGGCCCC-
GGGAAATCCCCN
 A C G T A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGGAGGCCCC---
TTGGGGGCGCCCCTAG
 A C G T A C G T A C G T A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGGAGGCCCC------
--CAGGCCNNGGCCNN
 A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GGGAGGCCCC
GGAAANCCCC
 A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGGAGGCCCC--
--AAGACCCYYN
 A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T A C G T
A C G T A C G T T C G A T G C A A C T G G T C A A G T C A G T C A G T C A G T C A G C T T G A C

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGGAGGCCCC-
-GTGGGCCCCA
 A C T G C T A G C T A G C T G A A C T G C A T G T G A C T A G C G A T C G T A C A C G T
A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A