Information for 25-CGGCAGCAGCAGCTGA (Motif 42)

G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C A C G T A C T G A G T C A G T C A C T G
p-value:1e-3
log p-value:-9.196e+00
Information Content per bp:1.938
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.29%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 1.0bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGGCAGCAGCAGCTGA
ADGGYAGYAGCATCT--
 A C G T G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA----
---NNNNAGCAGCTGCTGAN
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA-
-----NNAGCAGCTGCT
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA
------CAGCAGCTGN
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA
----AGCAGCTGCT--
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA-
----NGNGACAGCTGCN
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.64
Offset:7
Orientation:forward strand
Alignment:CGGCAGCAGCAGCTGA
-------ANCAGCTG-
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CGGCAGCAGCAGCTGA
-------AACAGCTG-
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:CGGCAGCAGCAGCTGA-
-------CGCAGCTGCG
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.62
Offset:7
Orientation:forward strand
Alignment:CGGCAGCAGCAGCTGA--
-------GACAGCTGCAG
 G T A C C T A G A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A C T G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G