Information for 24-GATAGTGAATATTTGC (Motif 41)

A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A C G T A C G T A A C G T C G T A A C G T A G C T A G T C C T G A A G T C A C G T C G T A A C G T G T A C
p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.903
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 14.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GATAGTGAATATTTGC
----ATGAATATTC--
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GATAGTGAATATTTGC
-NNTNNCAATATTAG-
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GATAGTGAATATTTGC
-NNTNNCAATATTAG-
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:4
Score:0.55
Offset:9
Orientation:forward strand
Alignment:GATAGTGAATATTTGC---
---------TRTTTACTTW
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GATAGTGAATATTTGC
----ATGMATATDC--
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:6
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GATAGTGAATATTTGC---
--------ATATTTACATA
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

FOXC1/MA0032.2/Jaspar

Match Rank:7
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:GATAGTGAATATTTGC---
--------ATATTTACATA
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GATAGTGAATATTTGC
-------AATAATT--
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.52
Offset:10
Orientation:reverse strand
Alignment:GATAGTGAATATTTGC----
----------ATTTGCATAT
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:10
Orientation:forward strand
Alignment:GATAGTGAATATTTGC----
----------ATTTGCATAA
 A C T G C G T A A C G T C G T A C T A G A G C T C T A G C T G A C G T A A C G T C G T A A C G T A C G T A C G T A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A