Information for 23-GATCTTTATGATGAAT (Motif 40)

A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G T C C G T A A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C T G C G T A A C G T A G T C
p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.7 +/- 20.2bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT---
-------ATGATKGATGRC
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0176.1_Sox5_2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT
-NNCTNAATTATGANN
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
A C G T G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT--
----NNTNTCATGAATGT
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT
--NTTTTACGAC----
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T A C G T A C G T

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GATCTTTATGATGAAT-
--TAATGATGATCACTA
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T
A C G T A C G T C G A T T G C A T C G A A G C T C A T G G C T A C G A T C T A G C G T A C A G T G A T C T C G A G T A C C G A T C G T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT
-DGWTTTATGRCN---
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.55
Offset:8
Orientation:forward strand
Alignment:GATCTTTATGATGAAT----
--------TGATTRATGGCY
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT
--NTTTTACGAC----
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT--
--------TGATTGATGA
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GATCTTTATGATGAAT
-ANTTTTACGACC---
 A C T G C G T A A C G T A G T C A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C G T A C T G C G T A C G T A A C G T
A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C A C G T A C G T A C G T