Information for 2-AACTHAATTTAAAATG (Motif 4)

C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C G T C G A T C A G T C G T A A C T G A C G T A C G T
p-value:1e-13
log p-value:-3.180e+01
Information Content per bp:1.873
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets65.5 +/- 17.4bp
Average Position of motif in Background66.5 +/- 18.1bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AACTHAATTTAAAATG
-----NATTCAAAT--
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:AACTHAATTTAAAATG------
-----NNTNNACAATGGGANNN
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0080.1_Tbp_1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AACTHAATTTAAAATG-
-NANTTATATATAANGN
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T
A C G T A G C T G T C A C A G T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A C G T A C T A G C T G A

PH0018.1_Dbx1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AACTHAATTTAAAATG-
TAATTAATTAATAATTA
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T
G A C T G C T A C T G A G C A T G C A T G C T A C G T A G C A T G C A T C G T A G C T A G C A T C G T A T C G A C G A T C G A T C T G A

PH0091.1_Lhx1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AACTHAATTTAAAATG
CGAATTAATTAATAATG
 A C G T C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:AACTHAATTTAAAATG
----GNCTATAAAAGG
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PH0101.1_Lmx1b/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AACTHAATTTAAAATG
NNAATTAATTAAAAANN
 A C G T C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AACTHAATTTAAAATG-----
------GTATAAAAGGCGGGG
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:forward strand
Alignment:AACTHAATTTAAAATG-----
------GTATAAAAGGCGGGG
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AACTHAATTTAAAATG
-----AATGGAAAAT-
 C G T A C G T A G T A C C G A T G C T A C G T A G T C A A C G T A C G T A C G T C G T A C G T A C G T A C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T