Information for 12-AAGCCTTTGACAA (Motif 27)

C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A G T C A C G T A C G T
p-value:1e-8
log p-value:-2.018e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.5 +/- 19.1bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGCCTTTGACAA
---CCTTTGATGT
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AAGCCTTTGACAA
---CCTTTGTT--
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:forward strand
Alignment:AAGCCTTTGACAA
---CCWTTGTY--
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AAGCCTTTGACAA
---CCTTTGAWGT
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AAGCCTTTGACAA-
------TTGCCAAG
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AAGCCTTTGACAA--
-----GGTGCCAAGT
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTTTGACAA---
AATCCCTTTGATCTATC
 A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A A C G T A C G T A C G T
C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTTTGACAA
CAAGCTT-------
 A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------AAGCCTTTGACAA
NNGGCCACGCCTTTN----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAGCCTTTGACAA---
ANTCCTTTGTCTNNNN
 C G T A C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C T G G T C A G T A C C G T A C G T A A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T