Information for 4-GCTATTATAAAACCAA (Motif 8)

A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
Reverse Opposite:
A G C T A C G T A T C G A C T G A C G T A C G T A C G T A C G T C G T A C G A T C T G A C G T A A C G T C G T A A C T G A G T C
p-value:1e-13
log p-value:-3.183e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.7 +/- 28.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTATTATAAAACCAA
CCGTATTATAAACAA--
 A C G T A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTATAAAACCAA
NCGTATTATAATCNTA-
 A C G T A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTATTATAAAACCAA
--NCYAATAAAA----
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTATTATAAAACCAA
--NGYCATAAAWCH--
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCTATTATAAAACCAA
---GTCATAAAAN---
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCTATTATAAAACCAA---
----GTATAAAAGGCGGGG
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCTATTATAAAACCAA---
----GTATAAAAGGCGGGG
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0129.1_Glis2_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCTATTATAAAACCAA
AATATTAATAAAGA--
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTATTATAAAACCAA
NANTATTATAATTNNN-
 A C G T A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCTATTATAAAACCAA
---GCAATAAAA----
 A C T G A G T C G C A T C G T A A C G T A G C T C G T A A C G T C G T A C G T A C G T A C G T A G T A C A T G C C G T A C T G A
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T