Information for 4-GCCGKAATTTCARACA (Motif 4)

A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
Reverse Opposite:
C G A T T A C G A G C T A G T C A C G T A T C G C G T A C G T A C G T A C G A T G C A T T G A C G T A C A C T G A T C G A T G C
p-value:1e-15
log p-value:-3.562e+01
Information Content per bp:1.677
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif15.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets57.8 +/- 27.0bp
Average Position of motif in Background55.3 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCGKAATTTCARACA
NNNGTAATTACNNATA
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GCCGKAATTTCARACA
----CGGTTTCAAA--
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

PB0187.1_Tcf7_2/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCGKAATTTCARACA-
--CCGTATTATAAACAA
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A A C G T
A C G T A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

PH0023.1_Dlx4/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCGKAATTTCARACA
GCGCTATAATTACCGAC-
 A C G T A C G T A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C A C G T

PH0022.1_Dlx3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCGKAATTTCARACA
TCGCGATAATTACCGAC-
 A C G T A C G T A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C A C G T

PB0169.1_Sox15_2/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCCGKAATTTCARACA-
--TNGAATTTCATTNAN
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A A C G T
A C G T A C G T A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GCCGKAATTTCARACA-----
----NNTTTTCACACCTTNNN
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCCGKAATTTCARACA
---GGGATTGCATNN-
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCCGKAATTTCARACA
---GWAAYHTGAKMC-
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T

LIN54/MA0619.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GCCGKAATTTCARACA
------NATTCAAAT-
 A T C G T A G C T G A C A C T G A C T G C G T A C G T A G C A T A C G T C G A T T A G C C G T A T C A G T C G A A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T