Information for 3-ACATGATKARKWA (Motif 9)

C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A
Reverse Opposite:
A C G T C G A T G T C A A G T C A C G T G T A C C G T A A C G T A G T C C G T A A C G T C T A G A C G T
p-value:1e-7
log p-value:-1.639e+01
Information Content per bp:1.878
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.7 +/- 35.8bp
Average Position of motif in Background35.5 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0150.1_Pou4f3/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-ACATGATKARKWA--
GACNTCATTAATAANN
 A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T A C G T
C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATGATKARKWA--
GANGTAATTAATTANN
 A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T A C G T
T C A G C T G A T G C A T C A G G A C T T G C A C G T A C G A T G A C T C T G A G C T A C G A T C G A T C T G A A G T C A G C T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ACATGATKARKWA--
AAACATAATGAGGTTGC
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0086.1_Irx5/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ACATGATKARKWA
AATATACATGTAAAATT-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ACATGATKARKWA-
--ATGATKGATGRC
 C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0176.1_Sox5_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--ACATGATKARKWA
TATCATAATTAAGGA
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PH0142.1_Pou1f1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-ACATGATKARKWA---
GANTTAATTAATTANNN
 A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T A C G T A C G T
T A C G G C T A G A T C G C A T C G A T G T C A G C T A C G A T C G A T C G T A C G T A C G A T C A G T G T C A G C T A A G C T G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ACATGATKARKWA
---TGATTGATGA
 C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A
A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

TFEC/MA0871.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACATGATKARKWA
ATCACGTGAC------
 A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A
T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PH0038.1_Hlx/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ACATGATKARKWA--
CCATAATTAATTACA
 C G T A A G T C C G T A A C G T A C T G C G T A A C G T A C T G C G T A C T A G A C G T C G T A C G T A A C G T A C G T
G T A C G T A C G T C A G A C T G C T A C G T A G A C T G C A T C T G A C T G A G C A T C G A T C T G A G A T C G T C A