Information for 2-KGWSMKKTAGTCC (Motif 7)

A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A C G T C G T A G T A C G T C A A C T G A T C G C G A T A G T C G T C A
p-value:1e-7
log p-value:-1.725e+01
Information Content per bp:1.831
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.2 +/- 23.7bp
Average Position of motif in Background39.3 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:KGWSMKKTAGTCC-----
-NANANTTAATCCCNNNN
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.61
Offset:-8
Orientation:reverse strand
Alignment:--------KGWSMKKTAGTCC
GCMTBCTGGGAGTTGTAGTY-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KGWSMKKTAGTCC-----
-GATAATTAATCCCTCTT
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.59
Offset:6
Orientation:forward strand
Alignment:KGWSMKKTAGTCC-
------TTAATCCT
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KGWSMKKTAGTCC----
-GNNAGCTAATCCCCCN
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:KGWSMKKTAGTCC-
------TTAATCCC
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:KGWSMKKTAGTCC--
-----NYTAATCCYB
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:KGWSMKKTAGTCC-----
-GANNATTAATCCCTNNN
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:KGWSMKKTAGTCC------
--ATAGTTAATCCCCCNNA
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

OTX1/MA0711.1/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:KGWSMKKTAGTCC-
------TTAATCCG
 A C G T A C T G C G T A A T G C G T A C A C G T A C T G A C G T C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G