Information for 4-GCCCKCAAMAAAKATG (Motif 3)

A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T T G A C A C G T A C G T A C G T A C T G C A G T G A C T C T A G G T C A A C T G A C T G A C T G A G T C
p-value:1e-30
log p-value:-7.098e+01
Information Content per bp:1.746
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.5 +/- 21.4bp
Average Position of motif in Background59.1 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCCCKCAAMAAAKATG
CTGCCCGCA---------
 A C G T A C G T A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.55
Offset:9
Orientation:forward strand
Alignment:GCCCKCAAMAAAKATG-----
---------CAAGATGGCGGC
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCCCKCAAMAAAKATG
TACTGGAAAAAAAA--
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:4
Score:0.51
Offset:8
Orientation:forward strand
Alignment:GCCCKCAAMAAAKATG--
--------AACATATGTT
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T G C A T G A C T C G A C A G T G T C A C G A T C A T G A C G T G A C T

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GCCCKCAAMAAAKATG--
--------NACATATGGN
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GCCCKCAAMAAAKATG--
---AACAAACAACAAGAG
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0186.1_Tcf3_2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCCCKCAAMAAAKATG
AGCCGAAAAAAAAAT--
 A C G T A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GCCCKCAAMAAAKATG
-----AAATAAACA--
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GCCCKCAAMAAAKATG-
---------ACATATGG
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G T A A C G T G T C A A C G T A C T G A T C G

YY1(Zf)/Promoter/Homer

Match Rank:10
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GCCCKCAAMAAAKATG-----
---------CAAGATGGCGGC
 A C T G A G T C A G T C G T A C C A G T A G T C C G T A G T C A T G A C G T C A C G T A C G T A A C T G C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C