Information for 14-TCCGCATTTATAG (Motif 11)

A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
Reverse Opposite:
A G T C C G A T G T C A A C G T G T C A C G T A C G T A A C G T T A C G A T G C A C T G A C T G C G T A
p-value:1e-9
log p-value:-2.274e+01
Information Content per bp:1.854
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.6 +/- 23.2bp
Average Position of motif in Background23.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCCGCATTTATAG
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCCGCATTTATAG
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PB0077.1_Spdef_1/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TCCGCATTTATAG
GTACATCCGGATTTTT--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCCGCATTTATAG--
---CCTTTTATAGNC
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

SRF/MA0083.3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCCGCATTTATAG---
TGACCATATATGGTCA
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCCGCATTTATAG--
--NTGATTTATGGCC
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
A C G T A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCCGCATTTATAG--
---DGWTTTATGRCN
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCCGCATTTATAG--
---TGATTTATGGCC
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

SPIC/MA0687.1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TCCGCATTTATAG
TACTTCCTCTTTTN---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
C A G T C G T A A G T C A C G T C G A T G T A C T A G C A C G T A T G C C G A T C A G T C A G T G A C T C A G T A C G T A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TCCGCATTTATAG
---CCATATATGG
 A C G T A G T C A G T C A T C G A T G C C G T A A C G T C G A T A C G T C G T A A C G T C G T A A C T G
A C G T A C G T A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G