Information for 16-GTCAGGCAAG (Motif 19)

A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
Reverse Opposite:
A T G C A G C T A C G T T A C G A G T C A G T C C G A T A T C G T C G A A T G C
p-value:1e-8
log p-value:-2.004e+01
Information Content per bp:1.844
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif147.0
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets52.1 +/- 23.4bp
Average Position of motif in Background45.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.80
Offset:2
Orientation:forward strand
Alignment:GTCAGGCAAG---
--AAGGCAAGTGT
 A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G A C G T A C G T A C G T
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTCAGGCAAG---
--CAGGTAAGTAT
 A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G A C G T A C G T A C G T
A C G T A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCAAG
TBGCACGCAA-
 A C G T A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCAAG
GGTCTGGCAT-
 A C G T A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCAGGCAAG
NACAGGAAAT
 A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

Pax2/MA0067.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCAGGCAAG
AGTCACGC---
 A C G T A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GTCAGGCAAG-
--CAGGTGAGG
 A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G A C G T
A C G T A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCAGGCAAG--
SCAGYCADGCATGAC
 A C G T A C G T A C G T A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTCAGGCAAG
SCTGTCAVTCAV-
 A C G T A C G T A C G T A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTCAGGCAAG
NACAGGAAAT
 A T C G A G C T A T G C C G T A A C T G C T A G A T G C C G T A C T G A A T C G
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T