Information for 3-TTYAGCACCMTGGCCA (Motif 6)

A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
Reverse Opposite:
G C A T T A C G A C T G A G T C G T A C T C G A A C G T A C T G C T A G A C G T A C T G A T G C C G A T T C A G T G C A G T C A
p-value:1e-12
log p-value:-2.898e+01
Information Content per bp:1.716
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.6 +/- 21.4bp
Average Position of motif in Background59.2 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TTYAGCACCMTGGCCA-----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA-----
-TCAGCACCATGGACAGCTCC
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA--
---RGSMTBCTGGGAAAT
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A A C G T A C G T
A C G T A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:4
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA
---TGCCCNNAGGGCA
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:5
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA
---TGCCCTNAGGGCA
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
A C G T A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.48
Offset:6
Orientation:forward strand
Alignment:TTYAGCACCMTGGCCA
------WDNCTGGGCA
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.48
Offset:7
Orientation:forward strand
Alignment:TTYAGCACCMTGGCCA-
-------CAAAGGTCAG
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0044.1_Mtf1_1/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TTYAGCACCMTGGCCA----
----GGGCCGTGTGCAAAAA
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA
---VRAACAATGG---
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:TTYAGCACCMTGGCCA
-TTMACACCTT-----
 A C G T A C G T A G T C C G T A A T C G T G A C G T C A A G T C G T A C T G C A A G C T A C T G T A C G G T A C A T G C C G T A
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T A C G T A C G T A C G T A C G T