Information for 17-CACGCAGAAC (Motif 30)

A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C G T A C T G
p-value:1e-6
log p-value:-1.458e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets26.2 +/- 21.4bp
Average Position of motif in Background60.8 +/- 42.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:CACGCAGAAC
CACGCA----
A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CACGCAGAAC
TBGCACGCAA---
A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGCAGAAC--
GCCGCGCAGTGCGT
A C G T A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACGCAGAAC
GCACGTNC---
A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACGCAGAAC
BGCACGTA----
A C G T A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CACGCAGAAC
GCACGTAY---
A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T

EGR2/MA0472.2/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CACGCAGAAC
ACGCCCACGCA----
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACGCAGAAC
GCACGTACCC-
A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACGCAGAAC
CCTGCTGAGH
A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CACGCAGAAC
CRCCCACGCA----
A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C T G A G T C C G T A A C T G C G T A C G T A A G T C
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T A C G T A C G T