Information for 3-GCAGCCAATS (Motif 3)

A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
Reverse Opposite:
A T C G C G T A G A C T G C A T C T A G A T C G G A T C G A C T T C A G T G A C
p-value:1e-19
log p-value:-4.574e+01
Information Content per bp:1.611
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif7.55%
Number of Background Sequences with motif901.0
Percentage of Background Sequences with motif1.95%
Average Position of motif in Targets52.4 +/- 26.2bp
Average Position of motif in Background49.3 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCAATS-
ACTAGCCAATCA
 A C G T A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.85
Offset:2
Orientation:forward strand
Alignment:GCAGCCAATS--
--AGCCAATCGG
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCAGCCAATS--
AAATGGACCAATCAG
 A C G T A C G T A C G T A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GCAGCCAATS
--TGCCAA--
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATS
CGTGCCAAG-
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATS
BCAGACWA--
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATS--------
TGGACCAATCAGCACTCT
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIA/MA0670.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATS
GGTGCCAAGT
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGCCAATS
-CAGCC----
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCAGCCAATS--
---GACAATGNN
 A C T G A G T C C T G A C T A G T A G C G A T C C G T A C T G A G C A T T A G C A C G T A C G T
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G