Information for 2-TGCGGAGCTGWCACAT (Motif 3)

A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
Reverse Opposite:
T G C A A C G T C T A G C A G T A C T G C G A T G A T C C T G A T A C G A G T C A G C T A T G C A G T C A C T G A G T C T C G A
p-value:1e-15
log p-value:-3.599e+01
Information Content per bp:1.722
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.1 +/- 5.9bp
Average Position of motif in Background56.8 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGCGGAGCTGWCACAT
--CGGAGC--------
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:TGCGGAGCTGWCACAT
-----ARNTGACA---
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TGCGGAGCTGWCACAT
RGKGGGCGGAGC--------
 A C G T A C G T A C G T A C G T A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.55
Offset:5
Orientation:forward strand
Alignment:TGCGGAGCTGWCACAT
-----AGGTGTCA---
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:TGCGGAGCTGWCACAT--
-NNNCAGCTGTCAATATN
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T A C G T A C G T
A C G T G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGCGGAGCTGWCACAT
AGGGGGCGGGGCTG------
 A C G T A C G T A C G T A C G T A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCGGAGCTGWCACAT-
-GCGGAGGTGTCGCCTC
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T A C G T
A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TGCGGAGCTGWCACAT
NCGCGGACGTTG-----
 A C G T A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGCGGAGCTGWCACAT
-----VGCTGWCAVB-
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TGCGGAGCTGWCACAT--
-TNNNNGGTGTCATNTNT
 A G C T A C T G A G T C T C A G A T C G C T G A A C T G A T G C A G C T C A T G G C T A A G T C G C T A A G T C T C G A A C G T A C G T A C G T
A C G T A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T