Information for 8-GCGGCCATGCTKK (Motif 12)

A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
Reverse Opposite:
G T A C G T C A C G T A C T A G G A T C C G T A A C G T A C T G A C T G A G T C A T G C A C T G A G T C
p-value:1e-12
log p-value:-2.919e+01
Information Content per bp:1.850
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.4 +/- 22.2bp
Average Position of motif in Background73.9 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GCGGCCATGCTKK
GCNGCCATCTTG-
 A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GCGGCCATGCTKK
GCCGCCATCTTG-
 A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGGCCATGCTKK
GTCCGCCATTA---
 A C G T A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCGGCCATGCTKK
GCGACCACACTG-
 A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCGGCCATGCTKK
NGTGGGCAT-----
 A C G T A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCGGCCATGCTKK
--GGCCATTAAC-
 A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCGGCCATGCTKK
--TGCCAA-----
 A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

HINFP/MA0131.2/Jaspar

Match Rank:8
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCGGCCATGCTKK
NCGCGGACGTTG---
 A C G T A C G T A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
T G A C G T A C T A C G T A G C C T A G A T C G C G T A T A G C T A C G A G C T A C G T T A C G A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----GCGGCCATGCTKK
NNNCAGCTGTCAATATN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GCGGCCATGCTKK
TACGCCCCGCCACTCTG-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C A T G G A T C A C G T A C G T A C T G
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T