Information for 6-CTCAGCCAAT (Motif 10)

T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T
Reverse Opposite:
G T C A G C A T G C A T C A T G T C A G T A G C G C A T A T C G C T G A A C T G
p-value:1e-13
log p-value:-3.018e+01
Information Content per bp:1.650
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif11.16%
Number of Background Sequences with motif2262.5
Percentage of Background Sequences with motif4.97%
Average Position of motif in Targets53.2 +/- 28.6bp
Average Position of motif in Background51.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CTCAGCCAAT--
ACTAGCCAATCA
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CTCAGCCAAT---
---AGCCAATCGG
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTCAGCCAAT
-BCAGACWA-
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CTCAGCCAAT
---TGCCAA-
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTCAGCCAAT---
AAATGGACCAATCAG
 A C G T A C G T T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

MAFK/MA0496.1/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTCAGCCAAT-
CTGAGTCAGCAATTT
 A C G T A C G T A C G T A C G T T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCAGCCAAT-
GTCAGCANNTN
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTCAGCCAAT
-CGTGCCAAG
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTCAGCCAAT--
HWWGTCAGCAWWTTT
 A C G T A C G T A C G T T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T A C G T A C G T
G T A C C G T A C G T A T A C G G C A T G T A C C G T A C A T G A G T C C G T A C G T A C G A T G C A T G C A T G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTCAGCCAAT
--CAGCC---
 T G A C G A C T T A G C C G T A A T C G A G T C G T A C C G T A C G T A C A G T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T