Information for 6-VSCCRATCRG (Motif 8)

T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
Reverse Opposite:
A T G C A G C T C T A G C G T A C G A T G A C T A C T G A T C G T A G C A G C T
p-value:1e-15
log p-value:-3.615e+01
Information Content per bp:1.650
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif8.73%
Number of Background Sequences with motif1418.2
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets54.7 +/- 24.4bp
Average Position of motif in Background49.4 +/- 34.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.86
Offset:0
Orientation:forward strand
Alignment:VSCCRATCRG
AGCCAATCGG
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----VSCCRATCRG
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--VSCCRATCRG------
TGGACCAATCAGCACTCT
 A C G T A C G T T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---VSCCRATCRG
ACTAGCCAATCA-
 A C G T A C G T A C G T T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

EN2/MA0642.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:VSCCRATCRG-
-CCCAATTAGC
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

MSX1/MA0666.1/Jaspar

Match Rank:6
Score:0.72
Offset:2
Orientation:forward strand
Alignment:VSCCRATCRG
--CCAATTAG
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:VSCCRATCRG
--CCAATTAA
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

Lhx8/MA0705.1/Jaspar

Match Rank:8
Score:0.72
Offset:2
Orientation:forward strand
Alignment:VSCCRATCRG
--CTAATTAG
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
A C G T A C G T A G T C A G C T T C G A C G T A A C G T A G C T C T G A T C A G

PH0089.1_Isx/Jaspar

Match Rank:9
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--VSCCRATCRG----
ACNNCTAATTAGNNNN
 A C G T A C G T T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.71
Offset:2
Orientation:forward strand
Alignment:VSCCRATCRG
--CCAATCAA
 T C G A A T C G A T G C A G T C C T G A C G T A A C G T A G T C T C G A T A C G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A