Information for 2-CGCCGCCATGTTR (Motif 2)

T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
Reverse Opposite:
A G C T T C G A G T C A T A G C C T G A A G C T A T C G A T C G T G A C C A T G T C A G G T A C A T C G
p-value:1e-19
log p-value:-4.489e+01
Information Content per bp:1.657
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif466.9
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets54.2 +/- 25.7bp
Average Position of motif in Background53.5 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:CGCCGCCATGTTR
-GCCGCCATCTTG
 T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:CGCCGCCATGTTR
-GCNGCCATCTTG
 T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCCGCCATGTTR
GTCCGCCATTA--
 T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGCCGCCATGTTR
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGCCGCCATGTTR
CCTTCGGCGCCAAAAGG
 A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
G A T C T A C G A G C T C G A T G A T C C T A G A T C G T G A C C A T G T A G C G A T C C T G A G T C A C T G A T C G A A C T G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CGCCGCCATGTTR
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGCCGCCATGTTR
AGCTCGGCGCCAAAAGC
 A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
G T A C A T C G G A C T C G A T G A T C C T A G A T C G G T A C C A T G T A G C G A T C C G T A G T C A C T G A T G C A A T C G A T G C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGCCGCCATGTTR-
NGTTGCCATGGCAA
 T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

E2F2/MA0864.1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CGCCGCCATGTTR
AAAATGGCGCCATTTT-
 A C G T A C G T A C G T A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C A T G C G C T A G C A T C G A T C G A T G C A T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCCATGTTR
GCTCCGCCCMCY--
 A C G T T A G C A C T G A G T C G T A C A C T G T A G C T A G C T C G A A G C T A T C G A C G T A G C T T C G A
C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T A C G T A C G T