Information for 19-AGTTTMCGAC (Motif 23)

G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C
Reverse Opposite:
T C A G C A G T G A T C A C T G C A T G C T G A C G T A G T C A T A G C A C G T
p-value:1e-8
log p-value:-1.891e+01
Information Content per bp:1.714
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif146.9
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets49.4 +/- 21.9bp
Average Position of motif in Background51.8 +/- 36.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0077.1_Hoxd12/Jaspar

Match Rank:1
Score:0.81
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTMCGAC----
NNNATTTTACGACNNTN
 A C G T A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0076.1_Hoxd11/Jaspar

Match Rank:2
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTMCGAC----
ANNATTTTACGACNTNA
 A C G T A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTMCGAC----
ANNTTTTACGACNTNN
 A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTMCGAC----
NNNTTTTACGACNTTN
 A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0067.1_Hoxc12/Jaspar

Match Rank:5
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTMCGAC----
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AGTTTMCGAC-
NTTTTACGACC
 G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGTTTMCGAC-
NTTTTACGACC
 G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTMCGAC----
NNGTTTTACGACTTTA
 A C G T A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:AGTTTMCGAC
NTTTTACGAC
 G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

Hoxa11/MA0911.1/Jaspar

Match Rank:10
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTMCGAC-
ANTTTTACGACC
 A C G T G T C A A T C G A C G T A C G T A G C T G T A C T G A C C A T G G T C A A G T C A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C