Information for 1-CTGCATGAGTATGATT (Motif 2)

A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A C G A T A G T C C G T A C A G T C G T A A G T C A G C T A T G C G C T A C G A T A C T G G T A C C G T A A T C G
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.734
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets54.9 +/- 25.9bp
Average Position of motif in Background54.0 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.55
Offset:9
Orientation:forward strand
Alignment:CTGCATGAGTATGATT
---------AATAATT
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.53
Offset:10
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT--
----------TTGATTGN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PB0069.1_Sox21_1/Jaspar

Match Rank:3
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CTGCATGAGTATGATT---
---TTTAATTATAATTAAG
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTGCATGAGTATGATT
ATTTGCATAACAAAG---
 A C G T A C G T A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G A C G T A C G T A C G T

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT---
---NNTAATTATAATTNNN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C

PB0079.1_Sry_1/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT---
---NANTATTATAATTNNN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

MNX1/MA0707.1/Jaspar

Match Rank:7
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT---
---------TTTAATTANN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T G C A T A C G T G C T A C T G A A C G T C A G T T C G A A T G C G A T C

EN1/MA0027.2/Jaspar

Match Rank:8
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT--
----------CTAATTAG
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G C A T T C G A C G T A A C G T A C G T C T G A T A C G

PRRX1/MA0716.1/Jaspar

Match Rank:9
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT--
----------NTAATTAN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C G A T C T G A C T G A C A G T A G C T C T G A T C A G

Dlx2/MA0885.1/Jaspar

Match Rank:10
Score:0.50
Offset:10
Orientation:reverse strand
Alignment:CTGCATGAGTATGATT--
----------NTAATTGN
 A T G C C G A T A C T G G T A C C G T A C G A T A T C G C T G A C T A G C G A T G T C A A C G T C T A G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T T G C A C G T A C A G T C A G T C T A G A T G C