Information for 3-GGGCCCTGCAGGGAAG (Motif 4)

A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
Reverse Opposite:
A G T C A G C T A G C T A G T C A G T C A T G C C G A T A T C G G T A C C G T A A C T G C T A G A C T G A T G C A G T C G T A C
p-value:1e-12
log p-value:-2.783e+01
Information Content per bp:1.769
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif41.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets55.5 +/- 20.7bp
Average Position of motif in Background54.2 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
---CACAGCAGGGGG-
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GGGCCCTGCAGGGAAG-
--DCHCAGCAGGRGGCC
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGGCCCTGCAGGGAAG
GGGGCTYGKCTGGGA--
 A C G T A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
CCACACAGCAGGAGA-
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGGCCCTGCAGGGAAG
--DCTCAGCAGG----
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
CCACACAGCAGGAGA-
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
GAGCACAGCAGGACA-
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
-TGCCCTGAGGGCA--
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:9
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
-----CTTCTGGGAAA
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GGGCCCTGCAGGGAAG
-TGCCCTGAGGGCA--
 A C T G A C T G A T C G A G T C A G T C A G T C C G A T A C T G T A G C C G T A A T C G A C T G T C A G C T G A C T G A A C T G
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T