Information for 9-TWCYCWTCARTMYCCA (Motif 9)

A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G C T G A A C G T C T G A A G C T A C G T A C T G C G T A G C T A C T A G C T A G A C T G G C T A G T C A
p-value:1e-11
log p-value:-2.585e+01
Information Content per bp:1.841
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.4 +/- 18.6bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TWCYCWTCARTMYCCA
TCACCCATCAATAAACA
 A C G T A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TWCYCWTCARTMYCCA-
--CTCATGAATATTCAT
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A A C G T
A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TWCYCWTCARTMYCCA--
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TWCYCWTCARTMYCCA
---ACTACAATTCCC-
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T A C G T A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

POL002.1_INR/Jaspar

Match Rank:5
Score:0.52
Offset:6
Orientation:forward strand
Alignment:TWCYCWTCARTMYCCA
------TCAGTCTT--
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TWCYCWTCARTMYCCA
--GCCATAAATCA---
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TWCYCWTCARTMYCCA
-----TCCAATCCACA
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:TWCYCWTCARTMYCCA
---TCATCAATCA---
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TWCYCWTCARTMYCCA
-RGCCATYAATCA---
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:TWCYCWTCARTMYCCA--
------SSAATCCACANN
 A C G T C G A T A G T C A G T C A G T C C G A T A C G T A G T C C G T A C T G A A G C T G T C A A G C T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C