Information for 4-GYCACTAGAGGGC (Motif 3)

T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C
Reverse Opposite:
A C T G T A G C A G T C G T A C G A C T A T G C G C A T C T G A A T C G C A G T A T C G T C A G A T G C
p-value:1e-15
log p-value:-3.485e+01
Information Content per bp:1.631
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.04%
Number of Background Sequences with motif138.3
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets56.2 +/- 27.8bp
Average Position of motif in Background51.0 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)-1.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GYCACTAGAGGGC-------
GCCASCAGGGGGCGCYVNNG
 T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GYCACTAGAGGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GYCACTAGAGGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GYCACTAGAGGGC-
GGTCANYTGAGGWCA
 A C G T T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GYCACTAGAGGGC-
AAGGTCACGAAAGGTCA
 A C G T A C G T A C G T T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GYCACTAGAGGGC-
GGGTTACTANAGGTCA
 A C G T A C G T T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T
C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GYCACTAGAGGGC
GTCCCCAGGGGA-
 T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GYCACTAGAGGGC------
--NNNAAGGGGGCGGGNNN
 T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GYCACTAGAGGGC--
-TCACCTCTGGGCAG
 T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C A C G T A C G T
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GYCACTAGAGGGC
---AACAGATGGC
 T A C G A G C T A T G C G T C A A T G C G A C T C G T A T A C G C T G A A C T G A C T G A T C G T G A C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C