Information for 3-MAKCAAGAGGKRA (Motif 6)

G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
Reverse Opposite:
A C G T A G T C G T A C A G T C A G T C A C G T A T G C A C G T A C G T A C T G G T C A A G C T A C G T
p-value:1e-11
log p-value:-2.636e+01
Information Content per bp:1.875
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.0 +/- 16.5bp
Average Position of motif in Background72.1 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:MAKCAAGAGGKRA
ATGCAACAGGTGG
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:MAKCAAGAGGKRA--
GAGCAACAGGTGGTT
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--MAKCAAGAGGKRA
GAGGTCAAAAGGTCA
 A C G T A C G T G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

NKX2-3/MA0672.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:MAKCAAGAGGKRA
-NTCAAGTGGN--
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:MAKCAAGAGGKRA
GGTCACGTGG---
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:MAKCAAGAGGKRA
-----AGRGGTCA
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---MAKCAAGAGGKRA-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----MAKCAAGAGGKRA
AGGTCACGGAGAGGTCA
 A C G T A C G T A C G T A C G T G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MAKCAAGAGGKRA
-BTBRAGTGSN--
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A
A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:MAKCAAGAGGKRA-----
-GGCGAGGGGTCAAGGGC
 G T C A C T G A A C G T A G T C C G T A C G T A A T C G C G T A A C T G A C T G A C T G C T A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C