Information for 6-GCTAAGGGCATGATTT (Motif 23)

A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
Reverse Opposite:
G C T A G T C A G T C A A C G T A G T C C G T A A C G T A T C G A T G C A T G C G T A C A C G T A C G T C G T A A C T G A T G C
p-value:1e-7
log p-value:-1.644e+01
Information Content per bp:1.864
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.46%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.4 +/- 18.3bp
Average Position of motif in Background66.6 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAGGGCATGATTT
GCCTCAGGGCAT-----
 A C G T A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T A C G T A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCTAAGGGCATGATTT------
-----TNNNATGATTTCNNCNN
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTAAGGGCATGATTT
-CTAATKGV-------
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTAAGGGCATGATTT
SCCTSAGGSCAW-----
 A C G T A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCTAAGGGCATGATTT
-CAAAGGTCAG-----
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCTAAGGGCATGATTT
--TRAGGTCA------
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:GCTAAGGGCATGATTT
--------CATGAC--
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCTAAGGGCATGATTT
--TNNGGGCAG-----
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:GCTAAGGGCATGATTT
-------NCGTGACN-
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GCTAAGGGCATGATTT
-NTAATBNAATTA---
 A T C G A G T C A C G T G T C A C G T A A C T G A T C G A T C G A T G C C G T A A C G T A C T G C G T A A C G T A C G T C G A T
A C G T G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A A C G T A C G T A C G T