Information for 3-CCTTGGMAACCCAAGG (Motif 17)

A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
Reverse Opposite:
A G T C A G T C C A G T C G A T A C T G A C T G A C T G G C A T A C G T A C T G A G T C A T G C C T G A C T G A C T A G A T C G
p-value:1e-9
log p-value:-2.136e+01
Information Content per bp:1.747
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.6 +/- 22.3bp
Average Position of motif in Background52.3 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGMAACCCAAGG
GTTGCCATGGCAAC------
 A C G T A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGMAACCCAAGG
TTGCCATGGCAACN-----
 A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTTGGMAACCCAAGG
TACCATAGCAACGGT---
 A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGMAACCCAAGG
TTGCCATGGCAACC-----
 A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTTGGMAACCCAAGG
SCCTAGCAACAG----
 A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CCTTGGMAACCCAAGG-
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Znf423/MA0116.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCTTGGMAACCCAAGG----
-----GGCACCCAGGGGTGC
 A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCTTGGMAACCCAAGG
CCGCATAGCAACGGA---
 A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCTTGGMAACCCAAGG
GTTGCCATGGCAACM-----
 A C G T A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCTTGGMAACCCAAGG
GTTGCCATGGCAACCG----
 A C G T A C G T A C G T A C G T A T G C A G T C A G C T G A C T T A C G T C A G T G A C G T C A C G T A A G T C A G T C T G A C G C T A G T C A T C A G C T A G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T A C G T A C G T