Information for 2-GGGGAATTCCCCT (Motif 3)

C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
Reverse Opposite:
C T G A C T A G C T A G T A C G T C A G C G T A C G T A C G A T G A C T A G T C A G T C G T A C G T A C
p-value:1e-12
log p-value:-2.965e+01
Information Content per bp:1.657
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.50%
Number of Background Sequences with motif123.1
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets59.8 +/- 20.4bp
Average Position of motif in Background47.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:GGGGAATTCCCCT
-GGGAAATCCCCN
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCCCCT
AGGGGATTCCCCT
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GGGGAATTCCCCT
-GGGGATTCCCCC
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:4
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GGGGAATTCCCCT
AGGGGATTCCCCT
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGGGAATTCCCCT
-GGAAATTCCC--
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGGGAATTCCCCT
-GGGGATTTCC--
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGGGAATTCCCCT
GGGGATTTCC---
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GGGGAATTCCCCT
-GGGAATTTCC--
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:GGGGAATTCCCCT
-------TCCCCA
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

SPIB/MA0081.1/Jaspar

Match Rank:10
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GGGGAATTCCCCT
------TTCCTCT
 C A T G C A T G A C T G T C A G C T G A C G T A G C A T G C A T A G T C A G T C A G T C G A T C G A C T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T